I attempted a clear coat repair on the hood of my 2011 FJ Cruiser about a year ago, with similar results. After some heavy rain I noticed a small bubble appearing, after it dried I barely touched it and it cracked and started to lift the surrounding clear. And it didn't even happen where I have stone chips, it happened in an area that seemed to be in good condition.
I didn't go the rattle can repair, it was a smallish spot barely an inch around, so I used a brush on, and in, clear coat. I brushed about 5 layers into it over a day or so till it had filled the hole, let it set for a couple more days, then wet sanded it down by hand till I thought it was level, it wasn't, I didn't notice till I polished it, but I wasn't too concerned as the spot was very visible because of metallic paint, I don't know if a spay clear would have been better. The clear started lifting within a couple of weeks anyway, the FJ lives outside anyway, so I masked off a suitable section of the hood and plastidipped it matte black, but a year later and the plastidip is lifting where the repair was, so I may just mask and spray it again, it's high enough that most people don't notice.